Зоонозные инфекции

Кластер цвета морской волны: эпидемиология, вирусология, генетика

Центральная работа в кластере морской волны написана канадским генетиком Марко А. Марра (Marra et al. 2003), работающим в области медицинской генетики. В работе описывается специфическая последовательность генома атипичной пневмонии, которая отличается от ранее известных групп коронавирусов. Марра и коллеги утверждают, что это может помочь диагностировать вирусную инфекцию как у людей, так и у потенциальных носителей-животных.

Значимые работы

• Calisher, Charles H., James E. Childs, Hume E. Field, Kathryn V. Holmes, and Tony Schountz. 2006. “Bats: Important Reservoir Hosts of Emerging Viruses.” Clinical Microbiology Reviews 19(3):531–45.
• Hahn, B. H., G. M. Shaw, K. M. De Cock, and P. M. Sharp. 2000. ‘AIDS as a Zoonosis: Scientific and Public Health Implications’. Science 287(5453):607–14.
• Marra, Marco A., Steven J. M. Jones, Caroline R. Astell, Robert A. Holt, Angela Brooks-Wilson, Yaron S. N. Butterfield, Jaswinder Khattra, Jennifer K. Asano, Sarah A. Barber, Susanna Y. Chan, Alison Cloutier, Shaun M. Coughlin, Doug Freeman, Noreen Girn, Obi L. Griffith, Stephen R. Leach, Michael Mayo, Helen McDonald, Stephen B. Montgomery, Pawan K. Pandoh, Anca S. Petrescu, A. Gordon Robertson, Jacqueline E. Schein, Asim Siddiqui, Duane E. Smailus, Jeff M. Stott, George S. Yang, Francis Plummer, Anton Andonov, Harvey Artsob, Nathalie Bastien, Kathy Bernard, Timothy F. Booth, Donnie Bowness, Martin Czub, Michael Drebot, Lisa Fernando, Ramon Flick, Michael Garbutt, Michael Gray, Allen Grolla, Steven Jones, Heinz Feldmann, Adrienne Meyers, Amin Kabani, Yan Li, Susan Normand, Ute Stroher, Graham A. Tipples, Shaun Tyler, Robert Vogrig, Diane Ward, Brynn Watson, Robert C. Brunham, Mel Krajden, Martin Petric, Danuta M. Skowronski, Chris Upton, and Rachel L. Roper. 2003. ‘The Genome Sequence of the SARS-Associated Coronavirus’. Science 300(5624):1399–1404.
• Reusken, Chantal, Bart Haagmans, Marcel Müller, Carlos Gutiérrez, Gert-Jan Godeke, Benjamin Meyer, Doreen Muth, Stalin Raj Victor, Laura Vries, Victor Corman, Jan-Felix Drexler, Saskia Smits, Yasmin Eltahir, Rita Sousa, Janko van Beek, Norbert Nowotny, Cornelis Maanen, Ezequiel Hidalgo, B. J. Bosch, and Marion Koopmans. 2013. ‘Middle East Respiratory Syndrome Coronavirus Neutralising Serum Antibodies in Dromedary Camels: A Comparative Serological Study’. The Lancet Infectious Diseases 13.
• Tong, Suxiang, Yan Li, Pierre Rivailler, Christina Conrardy, Danilo A. Alvarez Castillo, Li-Mei Chen, Sergio Recuenco, James A. Ellison, Charles T. Davis, Ian A. York, Amy S. Turmelle, David Moran, Shannon Rogers, Mang Shi, Ying Tao, Michael R. Weil, Kevin Tang, Lori A. Rowe, Scott Sammons, Xiyan Xu, Michael Frace, Kim A. Lindblade, Nancy J. Cox, Larry J. Anderson, Charles E. Rupprecht, and Ruben O. Donis. 2012. ‘A Distinct Lineage of Influenza A Virus from Bats’. Proceedings of the National Academy of Sciences 109(11):4269–74.

Фиолетовый кластер: вирусы гриппа свиного происхождения

Центральная и наиболее цитируемая работа фиолетового кластера была выполнена командой по исследованию нового свиного гриппа H1N1 под руководством Фатимы С. Давуд (Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team 2009). В статье анализируются случаи первой пандемии в 21 веке, вызванной вирусом гриппа свиного происхождения.

Обзоры

• Myers, Kendall P., Christopher W. Olsen, and Gregory C. Gray. 2007. ‘Cases of Swine Influenza in Humans: A Review of the Literature’. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 44(8):1084–88.
• Smith, Gavin J. D., Dhanasekaran Vijaykrishna, Justin Bahl, Samantha J. Lycett, Michael Worobey, Oliver G. Pybus, Siu Kit Ma, Chung Lam Cheung, Jayna Raghwani, Samir Bhatt, J. S. Malik Peiris, Yi Guan, and Andrew Rambaut. 2009. ‘Origins and Evolutionary Genomics of the 2009 Swine-Origin H1N1 Influenza A Epidemic’. Nature 459(7250):1122–25.

Значимые работы

• Brown, Ian H. 2000. ‘The Epidemiology and Evolution of Influenza Viruses in Pigs’. Veterinary Microbiology 74(1):29–46.
• Claas, Eric CJ, Albert DME Osterhaus, Ruud van Beek, Jan C. De Jong, Guus F. Rimmelzwaan, Dennis A. Senne, Scott Krauss, Kennedy F. Shortridge, and Robert G. Webster. 1998. ‘Human Influenza A H5N1 Virus Related to a Highly Pathogenic Avian Influenza Virus’. The Lancet 351(9101):472–77.
• Malik Peiris, J. S., Leo L. M. Poon, and Yi Guan. 2009. ‘Emergence of a Novel Swine-Origin Influenza A Virus (S-OIV) H1N1 Virus in Humans’. Journal of Clinical Virology 45(3):169–73.
• Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team, Fatimah S. Dawood, Seema Jain, Lyn Finelli, Michael W. Shaw, Stephen Lindstrom, Rebecca J. Garten, Larisa V. Gubareva, Xiyan Xu, Carolyn B. Bridges, and Timothy M. Uyeki. 2009. ‘Emergence of a Novel Swine-Origin Influenza A (H1N1) Virus in Humans’. The New England Journal of Medicine 360(25):2605–15.
• Taubenberger, J. K., A. H. Reid, A. E. Krafft, K. E. Bijwaard, and T. G. Fanning. 1997. ‘Initial Genetic Characterization of the 1918 “Spanish” Influenza Virus’. Science (New York, N.Y.)275(5307):1793–96.

Жёлтый кластер: вирусы гриппа птичьего происхождения

Самые цитируемые публикации жёлтого кластера написаны вирусологом Роном Фуше и коллегами про вирусы птичьего гриппа А, подтипы H5N1 и H7N7, которые несут угрозу пандемии для людей.

Обзоры

• Alexander, Dennis J. 2007. ‘An Overview of the Epidemiology of Avian Influenza’. Vaccine 25(30):5637–44.
• Capua, Ilaria, and Stefano Marangon. 2000. ‘The Avian Influenza Epidemic in Italy, 1999—2000: A Review’. Avian Pathology 29(4):289–94.
• Korteweg, Christine, and Jiang Gu. 2008. ‘Pathology, Molecular Biology, and Pathogenesis of Avian Influenza A (H5N1) Infection in Humans’. The American Journal of Pathology 172(5):1155–70.

Значимые работы

• Fouchier, Ron A. M., Peter M. Schneeberger, Frans W. Rozendaal, Jan M. Broekman, Stiena A. G. Kemink, Vincent Munster, Thijs Kuiken, Guus F. Rimmelzwaan, Martin Schutten, Gerard J. J. van Doornum, Guus Koch, Arnold Bosman, Marion Koopmans, and Albert D. M. E. Osterhaus. 2004. ‘Avian Influenza A Virus (H7N7) Associated with Human Conjunctivitis and a Fatal Case of Acute Respiratory Distress Syndrome’. Proceedings of the National Academy of Sciences of the United States of America 101(5):1356–61.
• Herfst, Sander, Eefje J. A. Schrauwen, Martin Linster, Salin Chutinimitkul, Emmie de Wit, Vincent J. Munster, Erin M. Sorrell, Theo M. Bestebroer, David F. Burke, Derek J. Smith, Guus F. Rimmelzwaan, Albert D. M. E. Osterhaus, and Ron A. M. Fouchier. 2012. ‘Airborne Transmission of Influenza A/H5N1 Virus between Ferrets’. Science 336(6088):1534–41.
• Li, Qun, Lei Zhou, Minghao Zhou, Zhiping Chen, Furong Li, Huanyu Wu, Nijuan Xiang, Enfu Chen, Fenyang Tang, Dayan Wang, Ling Meng, Zhiheng Hong, Wenxiao Tu, Yang Cao, Leilei Li, Fan Ding, Bo Liu, Mei Wang, Rongheng Xie, Rongbao Gao, Xiaodan Li, Tian Bai, Shumei Zou, Jun He, Jiayu Hu, Yangting Xu, Chengliang Chai, Shiwen Wang, Yongjun Gao, Lianmei Jin, Yanping Zhang, Huiming Luo, Hongjie Yu, Jianfeng He, Qi Li, Xianjun Wang, Lidong Gao, Xinghuo Pang, Guohua Liu, Yansheng Yan, Hui Yuan, Yuelong Shu, Weizhong Yang, Yu Wang, Fan Wu, Timothy M. Uyeki, and Zijian Feng. 2014. ‘Epidemiology of Human Infections with Avian Influenza A(H7N9) Virus in China’. New England Journal of Medicine 370(6):520–32.
• Taubenberger, Jeffery K., and John C. Kash. 2010. ‘Influenza Virus Evolution, Host Adaptation, and Pandemic Formation’. Cell Host & Microbe 7(6):440–51.
• Writing Committee of the Second World Health Organization Consultation on Clinical Aspects of Human Infection with Avian Influenza A (H5N1) Virus, Abdel-Nasser Abdel-Ghafar, Tawee Chotpitayasunondh, Zhancheng Gao, Frederick G. Hayden, Duc Hien Nguyen, Menno D. de Jong, Azim Naghdaliyev, J. S. Malik Peiris, Nahoko Shindo, Santoso Soeroso, and Timothy M. Uyeki. 2008. ‘Update on Avian Influenza A (H5N1) Virus Infection in Humans’. The New England Journal of Medicine 358(3):261–73.

Голубой кластер: гепатит E

Обзоры

• Chisholm, Cary, and Lisa Lopez. 2011. ‘Cutaneous Infections Caused by Herpesviridae: A Review’. Archives of Pathology & Laboratory Medicine 135(10):1357–62.
• Steel, Ariah J., and Guy D. Eslick. 2015. ‘Herpes Viruses Increase the Risk of Alzheimer’s Disease: A Meta-Analysis’. Journal of Alzheimer’s Disease 47(2):351–64.

Значимые работы

• Aggarwal, Rakesh, and Krzysztof Krawczynski. 2000. ‘Hepatitis E: An Overview and Recent Advances in Clinical and Laboratory Research’. Journal of Gastroenterology and Hepatology 15(1):9–20.
• Colson, Philippe, Patrick Borentain, Benjamin Queyriaux, Mamadou Kaba, Valérie Moal, Pierre Gallian, Laurent Heyries, Didier Raoult, and René Gerolami. 2010. ‘Pig Liver Sausage as a Source of Hepatitis E Virus Transmission to Humans’. The Journal of Infectious Diseases 202(6):825–34.
• Meng, Xiang-Jin, Robert H. Purcell, Patrick G. Halbur, James R. Lehman, Dale M. Webb, Tatiana S. Tsareva, Joseph S. Haynes, Brad J. Thacker, and Suzanne U. Emerson. 1997. ‘A Novel Virus in Swine Is Closely Related to the Human Hepatitis E Virus’. Proceedings of the National Academy of Sciences 94(18):9860–65.
• Mushahwar, Isa K. 2008. ‘Hepatitis E Virus: Molecular Virology, Clinical Features, Diagnosis, Transmission, Epidemiology, and Prevention’. Journal of Medical Virology 80(4):646–58.
• Pavio, Nicole, Xiang-Jin Meng, and Christophe Renou. 2010. ‘Zoonotic Hepatitis E: Animal Reservoirs and Emerging Risks’. Veterinary Research 41(6):46.

Синий кластер: условно-патогенные инфекции

Обзоры

• Ramirez, Norma E., Lucy A. Ward, and Srinand Sreevatsan. 2004. ‘A Review of the Biology and Epidemiology of Cryptosporidiosis in Humans and Animals’. Microbes and Infection 6(8):773–85.
• Zanoni, Brian C., and Rajesh T. Gandhi. 2014. ‘Update on Opportunistic Infections in the Era of Effective Antiretroviral Therapy’. Infectious Disease Clinics of North America 28(3):501–18.
• Mills, John, and Henry Masur. 1990. ‘AIDS-Related Infections’. Scientific American 263(2):50–59

Значимые работы

• Mathis, Alexander, Rainer Weber, and Peter Deplazes. 2005. ‘Zoonotic Potential of the Microsporidia’. Clinical Microbiology Reviews 18(3):423–45.
• Koehler, J. E., M. A. Sanchez, C. S. Garrido, M. J. Whitfeld, F. M. Chen, T. G. Berger, M. C. Rodriguez-Barradas, P. E. LeBoit, and J. W. Tappero. 1997. ‘Molecular Epidemiology of Bartonella Infections in Patients with Bacillary Angiomatosis-Peliosis’. The New England Journal of Medicine 337(26):1876–83.
• Sprong, Hein, Simone M. Cacciò, Joke W. B. van der Giessen, and ZOOPNET network and partners. 2009. ‘Identification of Zoonotic Genotypes of Giardia Duodenalis’. PLoS Neglected Tropical Diseases 3(12):e558.
• Wang, Lin, Hongwei Zhang, Xudong Zhao, Longxian Zhang, Guoqing Zhang, Meijin Guo, Lili Liu, Yaoyu Feng, and Lihua Xiao. 2013. ‘Zoonotic Cryptosporidium Species and Enterocytozoon Bieneusi Genotypes in HIV-Positive Patients on Antiretroviral Therapy’. Journal of Clinical Microbiology 51(2):557–63.
• Xiao, Lihua. 2010. ‘Molecular Epidemiology of Cryptosporidiosis: An Update’. Experimental Parasitology 124(1):80–89.

Источник данных: база данных научного цитирования Scopus. Мы искали по заголовкам, аннотациям и ключевым словам публикаций термины human-animal interface и zoonotic/animal virus transmission. Нашлось 8405 источников, для обзора выбраны 2000 самых цитируемых.
Поисковой запрос:
TITLE-ABS-KEY ( ( human W/0 animal W/1 interface ) OR ( zoonosis OR ( zoonotic OR animal OR swine OR avian OR bat W/10 potential OR transmission OR transmit OR spillover OR emerg* OR infect* ) AND epidemi* OR pandemi* OR *virus W/5 human ) AND NOT animal W/0 model* )